diff --git a/backend/server/src/DokkuClient.ts b/backend/server/src/DokkuClient.ts
index e2e9911..38c559d 100644
--- a/backend/server/src/DokkuClient.ts
+++ b/backend/server/src/DokkuClient.ts
@@ -1,15 +1,19 @@
 import { SSHConfig, SSHSocketClient } from "./SSHSocketClient"
 
+// Interface for the response structure from Dokku commands
 export interface DokkuResponse {
   ok: boolean
   output: string
 }
 
+// DokkuClient class extends SSHSocketClient to interact with Dokku via SSH
 export class DokkuClient extends SSHSocketClient {
   constructor(config: SSHConfig) {
+    // Initialize with Dokku daemon socket path
     super(config, "/var/run/dokku-daemon/dokku-daemon.sock")
   }
 
+  // Send a command to Dokku and parse the response
   async sendCommand(command: string): Promise<DokkuResponse> {
     try {
       const response = await this.sendData(command)
@@ -18,15 +22,18 @@ export class DokkuClient extends SSHSocketClient {
         throw new Error("Received data is not a string")
       }
 
+      // Parse the JSON response from Dokku
       return JSON.parse(response)
     } catch (error: any) {
       throw new Error(`Failed to send command: ${error.message}`)
     }
   }
 
+  // List all deployed Dokku apps
   async listApps(): Promise<string[]> {
     const response = await this.sendCommand("apps:list")
-    return response.output.split("\n").slice(1) // Split by newline and ignore the first line (header)
+    // Split the output by newline and remove the header
+    return response.output.split("\n").slice(1)
   }
 }
 
diff --git a/backend/server/src/FileManager.ts b/backend/server/src/FileManager.ts
index 1ef5077..2ac1a80 100644
--- a/backend/server/src/FileManager.ts
+++ b/backend/server/src/FileManager.ts
@@ -12,11 +12,13 @@ import {
 import { MAX_BODY_SIZE } from "./ratelimit"
 import { TFile, TFileData, TFolder } from "./types"
 
+// Define the structure for sandbox files
 export type SandboxFiles = {
   files: (TFolder | TFile)[]
   fileData: TFileData[]
 }
 
+// FileManager class to handle file operations in a sandbox
 export class FileManager {
   private sandboxId: string
   private sandbox: Sandbox
@@ -25,6 +27,7 @@ export class FileManager {
   private dirName = "/home/user"
   private refreshFileList: (files: SandboxFiles) => void
 
+  // Constructor to initialize the FileManager
   constructor(
     sandboxId: string,
     sandbox: Sandbox,
@@ -36,6 +39,7 @@ export class FileManager {
     this.refreshFileList = refreshFileList
   }
 
+  // Initialize the FileManager
   async initialize() {
     this.sandboxFiles = await getSandboxFiles(this.sandboxId)
     const projectDirectory = path.posix.join(
@@ -94,6 +98,7 @@ export class FileManager {
     }
   }
 
+  // Watch a directory for changes
   async watchDirectory(directory: string): Promise<WatchHandle | undefined> {
     try {
       const handle = await this.sandbox.files.watch(
@@ -130,7 +135,7 @@ export class FileManager {
               )
             }
 
-            // A new file or directory was created.
+            // Handle file/directory creation event
             if (event.type === "create") {
               const folder = findFolderById(
                 this.sandboxFiles.files,
@@ -140,16 +145,16 @@ export class FileManager {
 
               const newItem = isDir
                 ? ({
-                    id: sandboxFilePath,
-                    name: event.name,
-                    type: "folder",
-                    children: [],
-                  } as TFolder)
+                  id: sandboxFilePath,
+                  name: event.name,
+                  type: "folder",
+                  children: [],
+                } as TFolder)
                 : ({
-                    id: sandboxFilePath,
-                    name: event.name,
-                    type: "file",
-                  } as TFile)
+                  id: sandboxFilePath,
+                  name: event.name,
+                  type: "file",
+                } as TFile)
 
               if (folder) {
                 // If the folder exists, add the new item (file/folder) as a child
@@ -174,7 +179,7 @@ export class FileManager {
               console.log(`Create ${sandboxFilePath}`)
             }
 
-            // A file or directory was removed or renamed.
+            // Handle file/directory removal or rename event
             else if (event.type === "remove" || event.type == "rename") {
               const folder = findFolderById(
                 this.sandboxFiles.files,
@@ -206,7 +211,7 @@ export class FileManager {
               console.log(`Removed: ${sandboxFilePath}`)
             }
 
-            // The contents of a file were changed.
+            // Handle file write event
             else if (event.type === "write") {
               const folder = findFolderById(
                 this.sandboxFiles.files,
@@ -259,6 +264,7 @@ export class FileManager {
     }
   }
 
+  // Watch subdirectories recursively
   async watchSubdirectories(directory: string) {
     const dirContent = await this.sandbox.files.list(directory)
     await Promise.all(
@@ -271,15 +277,18 @@ export class FileManager {
     )
   }
 
+  // Get file content
   async getFile(fileId: string): Promise<string | undefined> {
     const file = this.sandboxFiles.fileData.find((f) => f.id === fileId)
     return file?.data
   }
 
+  // Get folder content
   async getFolder(folderId: string): Promise<string[]> {
     return getFolder(folderId)
   }
 
+  // Save file content
   async saveFile(fileId: string, body: string): Promise<void> {
     if (!fileId) return // handles saving when no file is open
 
@@ -295,6 +304,7 @@ export class FileManager {
     this.fixPermissions()
   }
 
+  // Move a file to a different folder
   async moveFile(
     fileId: string,
     folderId: string
@@ -318,6 +328,7 @@ export class FileManager {
     return newFiles.files
   }
 
+  // Move a file within the container
   private async moveFileInContainer(oldPath: string, newPath: string) {
     try {
       const fileContents = await this.sandbox.files.read(
@@ -333,6 +344,7 @@ export class FileManager {
     }
   }
 
+  // Create a new file
   async createFile(name: string): Promise<boolean> {
     const size: number = await getProjectSize(this.sandboxId)
     if (size > 200 * 1024 * 1024) {
@@ -360,11 +372,13 @@ export class FileManager {
     return true
   }
 
+  // Create a new folder
   async createFolder(name: string): Promise<void> {
     const id = `projects/${this.sandboxId}/${name}`
     await this.sandbox.files.makeDir(path.posix.join(this.dirName, id))
   }
 
+  // Rename a file
   async renameFile(fileId: string, newName: string): Promise<void> {
     const fileData = this.sandboxFiles.fileData.find((f) => f.id === fileId)
     const file = this.sandboxFiles.files.find((f) => f.id === fileId)
@@ -381,6 +395,7 @@ export class FileManager {
     file.id = newFileId
   }
 
+  // Delete a file
   async deleteFile(fileId: string): Promise<(TFolder | TFile)[]> {
     const file = this.sandboxFiles.fileData.find((f) => f.id === fileId)
     if (!file) return this.sandboxFiles.files
@@ -396,6 +411,7 @@ export class FileManager {
     return newFiles.files
   }
 
+  // Delete a folder
   async deleteFolder(folderId: string): Promise<(TFolder | TFile)[]> {
     const files = await getFolder(folderId)
 
@@ -413,6 +429,7 @@ export class FileManager {
     return newFiles.files
   }
 
+  // Close all file watchers
   async closeWatchers() {
     await Promise.all(
       this.fileWatchers.map(async (handle: WatchHandle) => {
@@ -420,4 +437,4 @@ export class FileManager {
       })
     )
   }
-}
+}
\ No newline at end of file
diff --git a/backend/server/src/SSHSocketClient.ts b/backend/server/src/SSHSocketClient.ts
index c653b23..0fe4152 100644
--- a/backend/server/src/SSHSocketClient.ts
+++ b/backend/server/src/SSHSocketClient.ts
@@ -1,5 +1,6 @@
 import { Client } from "ssh2"
 
+// Interface defining the configuration for SSH connection
 export interface SSHConfig {
   host: string
   port?: number
@@ -7,25 +8,29 @@ export interface SSHConfig {
   privateKey: Buffer
 }
 
+// Class to handle SSH connections and communicate with a Unix socket
 export class SSHSocketClient {
   private conn: Client
   private config: SSHConfig
   private socketPath: string
   private isConnected: boolean = false
 
+  // Constructor initializes the SSH client and sets up configuration
   constructor(config: SSHConfig, socketPath: string) {
     this.conn = new Client()
-    this.config = { ...config, port: 22 }
+    this.config = { ...config, port: 22 } // Default port to 22 if not provided
     this.socketPath = socketPath
 
     this.setupTerminationHandlers()
   }
 
+  // Set up handlers for graceful termination
   private setupTerminationHandlers() {
     process.on("SIGINT", this.closeConnection.bind(this))
     process.on("SIGTERM", this.closeConnection.bind(this))
   }
 
+  // Method to close the SSH connection
   private closeConnection() {
     console.log("Closing SSH connection...")
     this.conn.end()
@@ -33,6 +38,7 @@ export class SSHSocketClient {
     process.exit(0)
   }
 
+  // Method to establish the SSH connection
   connect(): Promise<void> {
     return new Promise((resolve, reject) => {
       this.conn
@@ -54,6 +60,7 @@ export class SSHSocketClient {
     })
   }
 
+  // Method to send data through the SSH connection to the Unix socket
   sendData(data: string): Promise<string> {
     return new Promise((resolve, reject) => {
       if (!this.isConnected) {
@@ -61,6 +68,7 @@ export class SSHSocketClient {
         return
       }
 
+      // Use netcat to send data to the Unix socket
       this.conn.exec(
         `echo "${data}" | nc -U ${this.socketPath}`,
         (err, stream) => {
diff --git a/backend/server/src/index.ts b/backend/server/src/index.ts
index ffaf067..9d82c4e 100644
--- a/backend/server/src/index.ts
+++ b/backend/server/src/index.ts
@@ -20,12 +20,14 @@ import { TerminalManager } from "./TerminalManager"
 import { User } from "./types"
 import { LockManager } from "./utils"
 
+// Handle uncaught exceptions
 process.on("uncaughtException", (error) => {
   console.error("Uncaught Exception:", error)
   // Do not exit the process
   // You can add additional logging or recovery logic here
 })
 
+// Handle unhandled promise rejections
 process.on("unhandledRejection", (reason, promise) => {
   console.error("Unhandled Rejection at:", promise, "reason:", reason)
   // Do not exit the process
@@ -35,8 +37,10 @@ process.on("unhandledRejection", (reason, promise) => {
 // The amount of time in ms that a container will stay alive without a hearbeat.
 const CONTAINER_TIMEOUT = 120_000
 
+// Load environment variables
 dotenv.config()
 
+// Initialize Express app and create HTTP server
 const app: Express = express()
 const port = process.env.PORT || 4000
 app.use(cors())
@@ -47,10 +51,12 @@ const io = new Server(httpServer, {
   },
 })
 
+// Check if the sandbox owner is connected
 function isOwnerConnected(sandboxId: string): boolean {
   return (connections[sandboxId] ?? 0) > 0
 }
 
+// Extract port number from a string
 function extractPortNumber(inputString: string): number | null {
   const cleanedString = inputString.replace(/\x1B\[[0-9;]*m/g, "")
   const regex = /http:\/\/localhost:(\d+)/
@@ -58,12 +64,15 @@ function extractPortNumber(inputString: string): number | null {
   return match ? parseInt(match[1]) : null
 }
 
+// Initialize containers and managers
 const containers: Record<string, Sandbox> = {}
 const connections: Record<string, number> = {}
 const fileManagers: Record<string, FileManager> = {}
 const terminalManagers: Record<string, TerminalManager> = {}
 
+// Middleware for socket authentication
 io.use(async (socket, next) => {
+  // Define the schema for handshake query validation
   const handshakeSchema = z.object({
     userId: z.string(),
     sandboxId: z.string(),
@@ -74,12 +83,14 @@ io.use(async (socket, next) => {
   const q = socket.handshake.query
   const parseQuery = handshakeSchema.safeParse(q)
 
+  // Check if the query is valid according to the schema
   if (!parseQuery.success) {
     next(new Error("Invalid request."))
     return
   }
 
   const { sandboxId, userId } = parseQuery.data
+  // Fetch user data from the database
   const dbUser = await fetch(
     `${process.env.DATABASE_WORKER_URL}/api/user?id=${userId}`,
     {
@@ -90,32 +101,39 @@ io.use(async (socket, next) => {
   )
   const dbUserJSON = (await dbUser.json()) as User
 
+  // Check if user data was retrieved successfully
   if (!dbUserJSON) {
     next(new Error("DB error."))
     return
   }
 
+  // Check if the user owns the sandbox or has shared access
   const sandbox = dbUserJSON.sandbox.find((s) => s.id === sandboxId)
   const sharedSandboxes = dbUserJSON.usersToSandboxes.find(
     (uts) => uts.sandboxId === sandboxId
   )
 
+  // If user doesn't own or have shared access to the sandbox, deny access
   if (!sandbox && !sharedSandboxes) {
     next(new Error("Invalid credentials."))
     return
   }
 
+  // Set socket data with user information
   socket.data = {
     userId,
     sandboxId: sandboxId,
     isOwner: sandbox !== undefined,
   }
 
+  // Allow the connection
   next()
 })
 
+// Initialize lock manager
 const lockManager = new LockManager()
 
+// Check for required environment variables
 if (!process.env.DOKKU_HOST)
   console.error("Environment variable DOKKU_HOST is not defined")
 if (!process.env.DOKKU_USERNAME)
@@ -123,6 +141,7 @@ if (!process.env.DOKKU_USERNAME)
 if (!process.env.DOKKU_KEY)
   console.error("Environment variable DOKKU_KEY is not defined")
 
+// Initialize Dokku client
 const client =
   process.env.DOKKU_HOST && process.env.DOKKU_KEY && process.env.DOKKU_USERNAME
     ? new DokkuClient({
@@ -133,6 +152,7 @@ const client =
     : null
 client?.connect()
 
+// Initialize Git client used to deploy Dokku apps
 const git =
   process.env.DOKKU_HOST && process.env.DOKKU_KEY
     ? new SecureGitClient(
@@ -141,6 +161,7 @@ const git =
       )
     : null
 
+// Handle socket connections
 io.on("connection", async (socket) => {
   try {
     const data = socket.data as {
@@ -149,6 +170,7 @@ io.on("connection", async (socket) => {
       isOwner: boolean
     }
 
+    // Handle connection based on user type (owner or not)
     if (data.isOwner) {
       connections[data.sandboxId] = (connections[data.sandboxId] ?? 0) + 1
     } else {
@@ -158,6 +180,7 @@ io.on("connection", async (socket) => {
       }
     }
 
+    // Create or retrieve container
     const createdContainer = await lockManager.acquireLock(
       data.sandboxId,
       async () => {
@@ -180,10 +203,12 @@ io.on("connection", async (socket) => {
       }
     )
 
+    // Function to send loaded event
     const sendLoadedEvent = (files: SandboxFiles) => {
       socket.emit("loaded", files.files)
     }
 
+    // Initialize file and terminal managers if container was created
     if (createdContainer) {
       fileManagers[data.sandboxId] = new FileManager(
         data.sandboxId,
@@ -203,6 +228,7 @@ io.on("connection", async (socket) => {
     // Load file list from the file manager into the editor
     sendLoadedEvent(fileManager.sandboxFiles)
 
+    // Handle various socket events (heartbeat, file operations, terminal operations, etc.)
     socket.on("heartbeat", async () => {
       try {
         // This keeps the container alive for another CONTAINER_TIMEOUT seconds.
@@ -214,6 +240,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to get file content
     socket.on("getFile", async (fileId: string, callback) => {
       try {
         const fileContent = await fileManager.getFile(fileId)
@@ -224,6 +251,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to get folder contents
     socket.on("getFolder", async (folderId: string, callback) => {
       try {
         const files = await fileManager.getFolder(folderId)
@@ -234,6 +262,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to save file
     socket.on("saveFile", async (fileId: string, body: string) => {
       try {
         await saveFileRL.consume(data.userId, 1)
@@ -244,6 +273,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to move file
     socket.on(
       "moveFile",
       async (fileId: string, folderId: string, callback) => {
@@ -263,6 +293,7 @@ io.on("connection", async (socket) => {
       message?: string
     }
 
+    // Handle request to list apps
     socket.on(
       "list",
       async (callback: (response: CallbackResponse) => void) => {
@@ -283,6 +314,7 @@ io.on("connection", async (socket) => {
       }
     )
 
+    // Handle request to deploy project
     socket.on(
       "deploy",
       async (callback: (response: CallbackResponse) => void) => {
@@ -313,6 +345,7 @@ io.on("connection", async (socket) => {
       }
     )
 
+    // Handle request to create a new file
     socket.on("createFile", async (name: string, callback) => {
       try {
         await createFileRL.consume(data.userId, 1)
@@ -324,6 +357,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to create a new folder
     socket.on("createFolder", async (name: string, callback) => {
       try {
         await createFolderRL.consume(data.userId, 1)
@@ -335,6 +369,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to rename a file
     socket.on("renameFile", async (fileId: string, newName: string) => {
       try {
         await renameFileRL.consume(data.userId, 1)
@@ -345,6 +380,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to delete a file
     socket.on("deleteFile", async (fileId: string, callback) => {
       try {
         await deleteFileRL.consume(data.userId, 1)
@@ -356,6 +392,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to delete a folder
     socket.on("deleteFolder", async (folderId: string, callback) => {
       try {
         const newFiles = await fileManager.deleteFolder(folderId)
@@ -366,6 +403,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to create a new terminal
     socket.on("createTerminal", async (id: string, callback) => {
       try {
         await lockManager.acquireLock(data.sandboxId, async () => {
@@ -387,6 +425,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to resize terminal
     socket.on(
       "resizeTerminal",
       (dimensions: { cols: number; rows: number }) => {
@@ -399,6 +438,7 @@ io.on("connection", async (socket) => {
       }
     )
 
+    // Handle terminal input data
     socket.on("terminalData", async (id: string, data: string) => {
       try {
         await terminalManager.sendTerminalData(id, data)
@@ -408,6 +448,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to close terminal
     socket.on("closeTerminal", async (id: string, callback) => {
       try {
         await terminalManager.closeTerminal(id)
@@ -418,6 +459,7 @@ io.on("connection", async (socket) => {
       }
     })
 
+    // Handle request to generate code
     socket.on(
       "generateCode",
       async (
@@ -442,7 +484,7 @@ io.on("connection", async (socket) => {
             }
           )
 
-          // Generate code from cloudflare workers AI
+          // Generate code from Cloudflare Workers AI
           const generateCodePromise = fetch(
             `${process.env.AI_WORKER_URL}/api?fileName=${encodeURIComponent(
               fileName
@@ -472,6 +514,7 @@ io.on("connection", async (socket) => {
       }
     )
 
+    // Handle socket disconnection
     socket.on("disconnect", async () => {
       try {
         if (data.isOwner) {
@@ -498,6 +541,7 @@ io.on("connection", async (socket) => {
   }
 })
 
+// Start the server
 httpServer.listen(port, () => {
   console.log(`Server running on port ${port}`)
 })