Expand experimental, supercomputer, pear, collab, and messaging modules

Add manual API helpers across categories: entropy spiral prune,
paradox clock compare/clear, mycelium pool borrow checks, pheromone and
memetic batch helpers, phase-shift align, paradox merge all-open, mirror
realm clear, work-stealer and thermal clearAll, cache warmBatch, GPU
releaseAll, disk stripe completion, pear worker-pipe and channel registry,
OTA history clear, import-map has/count, collab whiteboard batch and line
locks, cursor presence, gossip mesh publishBatch, dedup allSeen, key
rotation revokeAll, similarity LSH embedBatch, and bandwidth offer listing.

Co-authored-by: Cursor <[email protected]>

experimental/hyper-p2p-phase-shift-clock/index.js

@@ -73,6 +73,20 @@ class HyperP2PPhaseShiftClock extends EventEmitter {
     return max
   }
 
+  alignToPeer (peer) {
+    const remote = this._peerPhases.get(peer)
+    if (remote == null) return this._phaseMs
+    this._phaseMs = remote
+    this.emit('align', { peer, phaseMs: this._phaseMs })
+    return this._phaseMs
+  }
+
+  clearPeerPhases () {
+    const n = this._peerPhases.size
+    this._peerPhases.clear()
+    return n
+  }
+
   _gossip (data) {
     if (!this._peerMsgs) return
     gossipSend(this, data)