feat(agent): add configurable reasoning stream and in-OS ops tools
Add configurable reasoning/process visibility to /bin/agent via ~/.agent/config.json and setup wizard prompts, including bounded output and optional tool trace display. Expand agent capabilities with operational tools for service/timer inspection, cron/audit log reads, boot policy and kernel extension resolution, plus a new seeded agent-ops skill and updated workspace docs/tests to support the new automation workflow.
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@@ -1,7 +1,7 @@
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{
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"schema": 2,
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"profileId": "bare-os-posix-like",
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"generatedAt": "2026-04-26T02:43:49.731Z",
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"generatedAt": "2026-04-26T07:05:45.727Z",
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"note": "Sparse POSIX Issue 7 coverage hints for /bin utilities. Omitted command names are not yet profiled here.",
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"commandIndex": [
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{
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